shnitsel.vis.plot.pca_biplot
============================

.. py:module:: shnitsel.vis.plot.pca_biplot


Functions
---------

.. autoapisummary::

   shnitsel.vis.plot.pca_biplot.plot_noodleplot
   shnitsel.vis.plot.pca_biplot.plot_noodleplot_lines
   shnitsel.vis.plot.pca_biplot.get_loadings
   shnitsel.vis.plot.pca_biplot.plot_loadings
   shnitsel.vis.plot.pca_biplot.cluster_general
   shnitsel.vis.plot.pca_biplot.cluster_loadings
   shnitsel.vis.plot.pca_biplot.plot_clusters
   shnitsel.vis.plot.pca_biplot.get_clusters_coords
   shnitsel.vis.plot.pca_biplot.calc_dist
   shnitsel.vis.plot.pca_biplot.calc_angle
   shnitsel.vis.plot.pca_biplot.separate_angles
   shnitsel.vis.plot.pca_biplot.filter_cluster_coords
   shnitsel.vis.plot.pca_biplot.plot_clusters2
   shnitsel.vis.plot.pca_biplot.plot_clusters3
   shnitsel.vis.plot.pca_biplot.get_mask
   shnitsel.vis.plot.pca_biplot.circbins
   shnitsel.vis.plot.pca_biplot.plot_bin_edges
   shnitsel.vis.plot.pca_biplot.pick_clusters
   shnitsel.vis.plot.pca_biplot.binning_with_min_entries


Module Contents
---------------

.. py:function:: plot_noodleplot(noodle, hops=None, fig = None, ax=None, c=None, colorbar_label = None, cmap = None, cnorm = None, cscale=None, noodle_kws=None, hops_kws=None)

.. py:function:: plot_noodleplot_lines(noodle, ax=None, cmap=None, cnorm=None, cscale=None)

.. py:function:: get_loadings(frames, mean=False)

.. py:function:: plot_loadings(ax, loadings)

.. py:function:: cluster_general(decider, n)

.. py:function:: cluster_loadings(loadings, cutoff=0.05)

.. py:function:: plot_clusters(loadings, clusters, ax=None, labels=None)

.. py:function:: get_clusters_coords(loadings, atomcomb_clusters)

.. py:function:: calc_dist(point)

.. py:function:: calc_angle(point)

.. py:function:: separate_angles(points, min_angle=10)

.. py:function:: filter_cluster_coords(coords, n)

.. py:function:: plot_clusters2(ax, loadings, clusters, mol, min_angle=10, inset_scale=1, show_at_most=None)

.. py:function:: plot_clusters3(loadings, clusters, ax=None, labels=None, axs=None, mol=None)

.. py:function:: get_mask(angles, theta1, theta2, seam=180)

.. py:function:: circbins(angles, nbins=4, center=0)

.. py:function:: plot_bin_edges(angles, radii, bins, edges, picks, ax, labels)

.. py:function:: pick_clusters(frames, nbins, mean=False)

.. py:function:: binning_with_min_entries(nbins, angles, center, radii, min_entries=4, max_attempts=10, return_bins_edges=False)